Insertion junction: CLIP2.016901_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.016901
Chromosome:chromosome 10
Location:6167546
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g462500 PUS16 (1 of 1) 5.4.99.42 - tRNA pseudouridine(31) synthase; RNA pseudouridine synthase intron
Cre10.g462550 (1 of 34) IPR001878 - Zinc finger, CCHC-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGAGTTCCGAGAGTGTGTGTGCGATACACCATGCAAGGACCTGACCC
Internal bar code:TTAGCAGCGGTCGAGAATTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:883
LEAP-Seq percent confirming:74.0741
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTGTGGGAGTACTTGCGG
Suggested primer 2:AGCTATGATGCCGGTAGTGC