Insertion junction: CLIP2.016917_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.016917
Chromosome:chromosome 4
Location:1344934
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g214501 PNP1,PNT2 Chloroplast polyribonucleotide phosphorylase; (1 of 1) 2.7.7.8 - Polyribonucleotide nucleotidyltransferase / Polynucleotide phosphorylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCAACAGGATGTAAAGGTTCACGTGCATTGCATGTGTACGTGAAAATTT
Internal bar code:TACGGTTGGTGGTATTGCCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:172
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTACACGCACACACACACAC
Suggested primer 2:AGCAACCCTCTGAACTGCTC