Insertion junction: CLIP2.017069_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.017069
Chromosome:chromosome 2
Location:5780606
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g116900 SETB,HDP1 Homolog of small hydrophilic plant seed proteins; (1 of 1) PTHR34671:SF1 - EM-LIKE PROTEIN GEA6 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGATCGCCAACGCTTCCCTGTGTGCCCTCCTGGCGTGCCATGCAGGAT
Internal bar code:GGGTTAATAGACATACTGTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1442
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTCCGCCTTATGCTCGAT
Suggested primer 2:CTTCTCCCTTGCGGTCACAT