Insertion junction: CLIP2.017099_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.017099
Chromosome:chromosome 4
Location:1986627
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g218950 (1 of 1) IPR001841//IPR002110//IPR013083//IPR020683 - Zinc finger, RING-type // Ankyrin repeat // Zinc finger, RING/FYVE/PHD-type // Ankyrin repeat-containing domain 3'UTR
Cre04.g219000 (1 of 2) PTHR10887//PTHR10887:SF333//PTHR13779//PTHR13779:SF20 - DNA2/NAM7 HELICASE FAMILY // SUBFAMILY NOT NAMED // HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAAACCCACGGATAAAGCCGCACTTTCGCACGCGTCCAGTCGCATTCGT
Internal bar code:ATAAGCGTGGTCCGTGCCGGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1200
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTCGGGTAGCTCAGAGAA
Suggested primer 2:GGTACGAGGAGGTCTGAGGT