Insertion junction: CLIP2.017105_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.017105
Chromosome:chromosome 9
Location:4980312
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g405150 PUS1 RNA pseudouridine synthase; (1 of 2) PTHR11142//PTHR11142:SF0 - PSEUDOURIDYLATE SYNTHASE // TRNA PSEUDOURIDINE SYNTHASE-LIKE 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGTCATAAAACTGCTGTCACCAGCGACGGTTGTATGGGGTTTGTGTGG
Internal bar code:AATTGTGGCGTACTATGTACAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1095
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCTCATTACCCCTCGATC
Suggested primer 2:CACTCTGTGTACGTTGGGCT