Insertion junction: CLIP2.017356_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.017356
Chromosome:chromosome 11
Location:1332673
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467706 (1 of 1) PTHR10625//PTHR10625:SF117 - HISTONE DEACETYLASE // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGAGTACGCCATGCCAACATGCACGCGGTGGGCTAGCAGTGACGTAAGC
Internal bar code:TCGCGTCTCGCAGTGAGGTGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:561
LEAP-Seq percent confirming:57.8947
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCCCCATGCACACTGCTA
Suggested primer 2:GATGTTCTGGGGTGACAGGG