Insertion junction: CLIP2.017387_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.017387
Chromosome:chromosome 3
Location:4966722
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g179300 SRH6 (1 of 1) K11367 - chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12] (CHD1); SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGGCGGGGCCGGCTGTGTGCGCACTAGGGGTGCGTGCCCACCCAGCTG
Internal bar code:AGGGGCGGGCCAGATGAGGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:420
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CATAGTGCCCGACTAAGCGT
Suggested primer 2:GGCGACAAACACACAGACAC