Insertion junction: CLIP2.017408_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.017408
Chromosome:chromosome 11
Location:4343821
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g482700 (1 of 3) PF09011 - HMG-box domain (HMG_box_2) CDS
Cre11.g482750 (1 of 239) IPR016024 - Armadillo-type fold 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACAGGCCGGTCCAGAAAGAAGACTGTCGTTGAGCATGACAGCGTCGCAG
Internal bar code:CGTAATTGAACGATTATAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1170
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TCTCTCACACGCACACTCAC
Suggested primer 2:GCTCCCCATGCTTCAGATGT