Insertion junction: CLIP2.017463_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.017463
Chromosome:chromosome 12
Location:4365507
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g801409 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGACTGCACTGTTGCGCTGTCACTTCGGGAAAGTATGGGGATGGCTAT
Internal bar code:CCTCAAATATCATGTATCTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3030
LEAP-Seq percent confirming:70.8861
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:79

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTATCAGGGCCCAACTTG
Suggested primer 2:CCATCCTGCTCACTGCCTAC