Insertion junction: CLIP2.017539_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.017539
Chromosome:chromosome 13
Location:1274158
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g570700 CHI7,CHI4 (1 of 1) IPR001002//IPR001223//IPR011583//IPR017853//IPR029070 - Chitin-binding, type 1 // Glycoside hydrolase family 18, catalytic domain // Chitinase II // Glycoside hydrolase superfamily // Chitinase insertion domain; Chitinase-like hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCCGCTACCGATCCGCTGGGGTCCAACTTTCAACACAACCCGCTGCCC
Internal bar code:TGAGGATGCGCAAAGTTAAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4159
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:90
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:90

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGTGAGGCGGTGTTTAGG
Suggested primer 2:ACTTGGCCTCTGCATCTCAC