Insertion junction: CLIP2.017565_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.017565
Chromosome:chromosome 3
Location:1552326
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g152100 XRN2 5' to 3' exoribonuclease; (1 of 1) IPR004859//IPR027073//IPR029060 - Putative 5-3 exonuclease // 5'-3' exoribonuclease // PIN domain-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCCGCTGTGCTCGTTACACGTGCCGGTACATGCCACCGACCTGCCGCT
Internal bar code:ACTGCGGTGGTGTCTAGGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:921
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCAAAGTTTGTGGAGGCC
Suggested primer 2:GAGTGCGCAAACAAGAGCAA