Insertion junction: CLIP2.017650_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.017650
Chromosome:plastome
Location:8157
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802265 ChreCp003,2716966,chlB (1 of 1) K04039 - light-independent protochlorophyllide reductase subunit B (chlB); light-independent protochlorophyllide reductase subunit B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGAGCAGACTAAAAATTCAATTTTTGTTAAATCTGCAACTTTAACAAA
Internal bar code:TTCCTGGTCGGAGGTTTCCGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1883
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAAAACCAGGCTGCTTGG
Suggested primer 2:CCCGCTCATATCGGTGTGTT