Insertion junction: CLIP2.017758_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.017758
Chromosome:chromosome 17
Location:1301557
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g705350 CDPKK2 (1 of 3) K07359 - calcium/calmodulin-dependent protein kinase kinase (CAMKK); Calcium/Calmodulin Dependent Protein Kinase Kinase Homolog 2 isoform beta putative intron
Cre17.g705400 POA1 20S proteasome alpha subunit A; (1 of 1) K02730 - 20S proteasome subunit alpha 1 (PSMA6) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGTCTTAACCGCGCTCGTGCTGCCCTCTTTTAGTCTGCTCACCAAAGCG
Internal bar code:TGGCTTGACACGGTCCGGCCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:945
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGATTGTGTGCGTGCTGG
Suggested primer 2:TGTCGTCCTGCGTGTTGTAA