Insertion junction: CLIP2.017945_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.017945
Chromosome:chromosome 6
Location:2551090
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g800642 (1 of 1) PF05066//PF10537//PF15613//PF15614 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // ATP-utilising chromatin assembly and remodelling N-terminal (WAC_Acf1_DNA_bd) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTGTGGGTGGGTAGTGCGTGTGTAGGAGTGGGTGTAGGTGGGTGGCTGG
Internal bar code:TATTTACAGTGTGTGAATTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:648
LEAP-Seq percent confirming:30.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGGCCTGTGTTTTGAGTG
Suggested primer 2:GGGTATGGGGTTGTCAGGTG