Insertion junction: CLIP2.018108_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.018108
Chromosome:chromosome 12
Location:5867508
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g533400 (1 of 1) PTHR13527:SF0 - SAYSVFN DOMAIN-CONTAINING PROTEIN 1 intron
lncRNA_TCONS_00110219 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAACAGTCAGAGAGTCCACACGCCAAGCCCAGCACCTAGCCCATTGTCGG
Internal bar code:GTGGATGTAATTGTTTTGCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1464
LEAP-Seq percent confirming:96.7742
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCTCGTGCTCGGCATTAT
Suggested primer 2:GTGCAGTACGGTGTGAAGGA