Insertion junction: CLIP2.018135_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.018135
Chromosome:chromosome 2
Location:2761707
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g093950 PUMPKIN (1 of 1) 2.7.4.22 - UMP kinase / Uridylate kinase; Putative plastid UMP kinase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCGCTGACGGCGACAGGAGACTTGGTCACCAGTGAAGGGCGCACGACGC
Internal bar code:GAGTGAAGTGTTCTATAATGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1761
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTAGAGCCATAGACGCAA
Suggested primer 2:TCCCAATCCCATTGCCCTTC