Insertion junction: CLIP2.018179_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.018179
Chromosome:chromosome 7
Location:2023011
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g325700 SRH15 SNF2-related DNA/RNA helicase; (1 of 1) PTHR10799//PTHR10799:SF577 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // PROTEIN TAF-3, ISOFORM A intron
Cre07.g800788 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCGGTAGCATTTGATGCCTGTGTTTTATACCCGCCTGCCCGCAGGAG
Internal bar code:TCTATCGCATTCGTGACGGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3306
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:CAACCATCATTCGGCAGCAG
Suggested primer 2:GGTGTGTGTGTGTGTGTGTG