Insertion junction: CLIP2.018265_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.018265
Chromosome:chromosome 17
Location:4141441
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g729101 PHC37 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Putative pherophorin-chlamydomonas homolog intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGCCATCGGAGGTCTCACGCGCGCTCTGTTCACTCCCCGGCTGGCTCT
Internal bar code:AAAGATTATGCGCGAGTGTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:284
LEAP-Seq percent confirming:58.1395
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:GAGGAGGAGGTGGAGGAGG
Suggested primer 2:GAGCAGCCATACTACCGGTC