Insertion junction: CLIP2.018291_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.018291
Chromosome:chromosome 5
Location:973912
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g247000 (1 of 1) PF00439//PF00628//PF02791 - Bromodomain (Bromodomain) // PHD-finger (PHD) // DDT domain (DDT) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCGGGCCAGCGCCGCGGCCTCACCAGCTCCCGCACCGCCTGCTCCGCC
Internal bar code:ACACAACATCCTAACACTATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:583
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCCCTCCCTCTTCCTTC
Suggested primer 2:CCCCCTCCCCATGTAAAACC