Insertion junction: CLIP2.018431_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.018431
Chromosome:chromosome 10
Location:5241523
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456250 TRX16,TRX25,TRL11 (1 of 4) PTHR10438//PTHR10438:SF255 - THIOREDOXIN // THIOREDOXIN M4, CHLOROPLASTIC; Thioredoxin-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCTCGGGGAAAAAGTCAGCAATACACAACGATGCCGTGCATGCGGCTC
Internal bar code:TTTGGCATGGTATATGACAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2826
LEAP-Seq percent confirming:90.566
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGGAGGCAGCTATCTCAG
Suggested primer 2:CAAACAACCGACAAGCCCAG