Insertion junction: CLIP2.018802_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.018802
Chromosome:chromosome 3
Location:5149205
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800343 (1 of 20) IPR010095//IPR013083 - Transposase IS605, OrfB, C-terminal // Zinc finger, RING/FYVE/PHD-type intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCCAAGGACAGGGGGTTCCAGCGGCTACTCCACGGCCGAAACCTGCGT
Internal bar code:TTATACCTAACTAACGACATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1140
LEAP-Seq percent confirming:78.9474
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CATGCAAACAACTCACCGCA
Suggested primer 2:CGTTATTACCAAGCAGGCGC