Insertion junction: CLIP2.018820_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.018820
Chromosome:chromosome 6
Location:1098919
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g257600 FA1 (1 of 4) PF13516 - Leucine Rich repeat (LRR_6); Flagellar Autonomy Protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCATATCAACACAAGGGGGTCCCCCATGTCTGTGGATGGGCTGCCATAT
Internal bar code:ATAGGTTGAAGGGGCTGTATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2335
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TCAAGCGTGCATCTGGTGAT
Suggested primer 2:CGCAATCATTCGCACCTAGC