Insertion junction: CLIP2.019063_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.019063
Chromosome:chromosome 11
Location:3749637
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g801328 (1 of 4) PF00385//PF00665 - Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Integrase core domain (rve) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACGAGGCTATAAGGCGCGACTATCTCTGGGAAGGTCTGGGCGCAGACTG
Internal bar code:GTATTAAAGTTATCCGACGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3895
LEAP-Seq percent confirming:43.3962
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTGTGCGCAAGAGCTTGT
Suggested primer 2:CGGACGCATCAATCTACGGA