Insertion junction: CLIP2.019193_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.019193
Chromosome:chromosome 17
Location:2640221
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716700 (1 of 77) IPR029071 - Ubiquitin-related domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGAACTTGACCTTGCATGGGATCTGGCGATTGCGCTGTTGGAAGCTCG
Internal bar code:GTTACGCTCTCCTGCGCCTATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1780
LEAP-Seq percent confirming:94.0
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGCCTACACTTGGTGCAT
Suggested primer 2:GCTGCAGTGGTAGGGTCTTT