Insertion junction: CLIP2.019231_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.019231
Chromosome:chromosome 5
Location:310524
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800514 (1 of 1) PTHR19878//PTHR19878:SF8 - AUTOPHAGY PROTEIN 16-LIKE // AUTOPHAGIC-RELATED PROTEIN 16.1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGAGGGAGGCAATCAATGCAGCCAAACCCAAGCGTGCATACATTTCCG
Internal bar code:ATTCGTTCCAGAGACGAGCAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:706
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGATCCGCCATGAAGTTT
Suggested primer 2:CGTGGTGCCGTACTATCCTC