Insertion junction: CLIP2.019274_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.019274
Chromosome:chromosome 12
Location:4352878
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g519180 EFT1a,PSRP7,EFT1 Chloroplast elongation factor Ts-like protein; (1 of 1) K02357 - elongation factor Ts (tsf, TSFM) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGTGTGACCACGATATACAGGTGCTGGCAAAGGAGCGCGAGGTGGAGA
Internal bar code:TAGCTCCCTATCCTCGCCGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2579
LEAP-Seq percent confirming:89.6552
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGGGCTCCTCCTTCTTGG
Suggested primer 2:CGATGTGAACAGGCCAGACT