Insertion junction: CLIP2.019321_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.019321
Chromosome:chromosome 13
Location:2785003
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801538 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAATCACAAGTCTGGCGGGCTAGACCGCGTACCTGCAGAGTGCTACAAG
Internal bar code:TGTTGATGGCGTTACCAACTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2928
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:42
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCGTCAACTACTGGGCAA
Suggested primer 2:GCAAAGTGCTATACCGTGCG