Insertion junction: CLIP2.019476_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.019476
Chromosome:chromosome 2
Location:1739722
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800182 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCAAAGTGTGAACGTCTGGTGTTCACTTCAGACGACCAGGAGCGTCGTA
Internal bar code:CCAGCCCGGGGGAACTAGGACA

Confirmation - LEAP-Seq

LEAP-Seq distance:2882
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:CGGAAAACTGTGCAAGACGG
Suggested primer 2:GCAAAGCACAAGAAGACGCA