Insertion junction: CLIP2.019544_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.019544
Chromosome:chromosome 9
Location:6646455
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g416450 (1 of 14) PF04577 - Protein of unknown function (DUF563) (DUF563) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGCGCGTATGGCCGGCAACCTCCCACGTCCCCCAGGCTTCGTCGCAGG
Internal bar code:TTGTGTTCACATTGCGGCGCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2302
LEAP-Seq percent confirming:97.5
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GATGCGCATGTACCGTTTCC
Suggested primer 2:TCAACAAGAGGGGTACGTGC