Insertion junction: CLIP2.020005_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020005
Chromosome:chromosome 17
Location:1420356
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g706300 XPD1,RAD3C (1 of 1) K10844 - DNA excision repair protein ERCC-2 (ERCC2, XPD); RAD3/XP-D family DNA-binding helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACAACTCCGGTATGTGGGCGGGTGTCCTTCGGCATTCCACCCCCTCT
Internal bar code:GCGATGTAAAGCGATATAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:547
LEAP-Seq percent confirming:96.9697
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTGTTTCTGACGGAGCTG
Suggested primer 2:TGACCACGGTCTGGAACTTG