Insertion junction: CLIP2.020052_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.020052
Chromosome:chromosome 12
Location:3431164
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497652 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCTGCGTACCAGCGGACCTTGAAGCAGCAACCCCCGGCCGCTCTTCGG
Internal bar code:CATCTAGTAAGGACTGCTGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:323
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTATCAGGGCCCAACTTG
Suggested primer 2:ACAGCTCCCAAGTCATGACG