Insertion junction: CLIP2.020124_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020124
Chromosome:chromosome 15
Location:867196
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g640250 (1 of 1) K07562 - nonsense-mediated mRNA decay protein 3 (NMD3) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCATCCCGCCCTCATTCGCACCCTACTCCTTCGGCGCATGGTATCGCC
Internal bar code:TTCTGTAACCGGTAGCGAATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:290
LEAP-Seq percent confirming:61.9048
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GTTAGGTGGGATGGTGGTGG
Suggested primer 2:CGTGGCAATGCATGTACTCG