Insertion junction: CLIP2.020234_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.020234
Chromosome:chromosome 10
Location:1764482
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g430501 (1 of 1) PTHR22904//PTHR22904:SF331 - TPR REPEAT CONTAINING PROTEIN // CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN CDS
Cre10.g801118 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTGAAGGTCAATGTGCCTGTGAAGGCAAAAGCAGGTCCTCAGGAGTGA
Internal bar code:TGCACCTTCTTAGGTTTGTCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:197
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTGCCGATCGCTATCATT
Suggested primer 2:GTGAGGGTGAGTGTGTGAGG