Insertion junction: CLIP2.020240_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.020240
Chromosome:chromosome 8
Location:2900190
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g374250 SAG1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Plus agglutinin protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGATCATATGGGTCCGCGATGTCGTAGTTCTCGCAGCTGCTGCATTCA
Internal bar code:GATAATTTTAACAAGGGGGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1147
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACGTCCTCTGGAACGTG
Suggested primer 2:CCACTTGAACACACTGCTGC