Insertion junction: CLIP2.020240_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.020240
Chromosome:chromosome 8
Location:2900193
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g374250 SAG1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Plus agglutinin protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGATAAGATAGCAAATGGCATCGTGCCGGCGGTCATCACGGCCCTGGAT
Internal bar code:GATAATTTTAACAAGGGGGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:861
LEAP-Seq percent confirming:78.5714
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CCACTTGAACACACTGCTGC
Suggested primer 2:TTGACGTCCTCTGGAACGTG