Insertion junction: CLIP2.020253_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020253
Chromosome:chromosome 17
Location:6498059
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g744497 (1 of 1) PF09783 - Vacuolar import and degradation protein (Vac_ImportDeg) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCACGCCCCCTCCGCCGCCGCCGCCGCCGCAGTCTCCACCGGGAGGAGC
Internal bar code:AGTGTGGTCGTGTTGCGGGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:990
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TGGACACACACACACACACA
Suggested primer 2:CATGCCCGGAATGAATGCAG