Insertion junction: CLIP2.020297_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020297
Chromosome:chromosome 13
Location:4192203
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591501 PUS2 (1 of 2) PTHR11142:SF0 - TRNA PSEUDOURIDINE SYNTHASE-LIKE 1; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGAATTGGGGAGCCTTGATCGTGCCAGAGGTGAAGCATACCGACCAATG
Internal bar code:ACTACACTTTATTGTAGGGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:216
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGCACGGCTTTGAATTCG
Suggested primer 2:AGGACTGTAGCGACATTGCC