Insertion junction: CLIP2.020378_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.020378
Chromosome:chromosome 14
Location:2633224
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g625350 MAE17 MATE efflux family protein; (1 of 3) PTHR11206:SF95 - MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGATTGGGCTGGGGGCGGGACCGTGTGCGGTCGGGCCGGGTGGGTGGT
Internal bar code:ATTTTGGAACTCAAACCGGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:816
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:ACTAGCAGGGGAGTTAGGGG
Suggested primer 2:CCTACTGTTCCTGCTGGACG