Insertion junction: CLIP2.020385_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.020385
Chromosome:chromosome 4
Location:470681
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g217922 (1 of 1) K10601 - E3 ubiquitin-protein ligase synoviolin (SYVN1, HRD1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGGAACTGTACATATTCATTCGTGTCCGCCAGGTCTCAGTACCCAATG
Internal bar code:CCCCTCATCACTGAATGAGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:923
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTCTTCCACCTACACTGC
Suggested primer 2:GGGTTGAACAGCCCCATCAT