Insertion junction: CLIP2.020608_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.020608
Chromosome:chromosome 6
Location:6939260
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00081283

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGAGTGATCACCGCTACACCATACGACCAGAAATTGAAAGCGCGTGC
Internal bar code:GAGGATTTAGCCTTGGCGCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:456
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTCACTTGCCACCTACGG
Suggested primer 2:GCCAGCATCCACAGTACCTT