Insertion junction: CLIP2.020608_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.020608
Chromosome:chromosome 6
Location:6939260
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00081283

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTTGAATCCAGCAACACGGGTTCGAATCCCGTTACGACCTCATCCTTTT
Internal bar code:GAGGATTTAGCCTTGGCGCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2924
LEAP-Seq percent confirming:94.2029
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAGCATCCACAGTACCTT
Suggested primer 2:AGTTCACTTGCCACCTACGG