Insertion junction: CLIP2.020642_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.020642
Chromosome:chromosome 14
Location:1811439
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g619613 (1 of 1) PF04855 - SNF5 / SMARCB1 / INI1 (SNF5) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCAGGTGGGTGGGAGGGTGGAGGCGAGGGGAGGGACCCATTCTAGTCC
Internal bar code:AAGACGATGGTTCCCGTTCGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:376
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ACTATGCCCATCCCTGACCT
Suggested primer 2:GCCCTCTCTCTCGCACATAC