Insertion junction: CLIP2.020648_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.020648
Chromosome:chromosome 2
Location:4981443
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g110600 DEG5 (1 of 2) PTHR22939:SF99 - PROTEASE DO-LIKE 8, CHLOROPLASTIC; Deg protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGGACCGCACGTCGTCACCAACTTCCACATCATCCCGCCTTTGAACAG
Internal bar code:GCGGGACATCATCTTGGGCAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2656
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:51
LEAP-Seq n unique pos:68

Suggested primers for confirmation by PCR

Suggested primer 1:ATAGCGGACTATGTGTGCCG
Suggested primer 2:ACTGCTCAAGACACGCGTAA