Insertion junction: CLIP2.020665_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020665
Chromosome:chromosome 16
Location:1126530
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g649800 PPR3,CYCR6 (1 of 1) PF02984//PF13041 - Cyclin, C-terminal domain (Cyclin_C) // PPR repeat family (PPR_2); PentatricoPeptide Repeat protein 3 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGACAAGTGTCCTCACAGAATACATCTCAACGCACGCCAGGAACCAACA
Internal bar code:AAATTTGTTTACCGAAGCTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:259
LEAP-Seq percent confirming:7.5
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGTAGTTGTTGCTGCAGC
Suggested primer 2:CTTAAACCGGTGCGCAACAA