Insertion junction: CLIP2.020694_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.020694
Chromosome:chromosome 17
Location:1637658
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g707650 SNRK2L (1 of 4) PTHR24343//PTHR24343:SF167 - SERINE/THREONINE KINASE // SUBFAMILY NOT NAMED; snRK1 family in Chlamydomonas, subgroup 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTGATTCTTGCGCGCCTGCGCATGCTTGGTGCAGTATCTGATTGTTGC
Internal bar code:GGACCCGGTCAGGGATTTTAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1996
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCTCTGATACGCCTGAG
Suggested primer 2:CATACCCCAGCACCACCAAT