Insertion junction: CLIP2.020701_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.020701
Chromosome:plastome
Location:82782
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802298 ChreCp033,rpoA,2717004 (1 of 1) PF03118 - Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD); RNA polymerase alpha subunit CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGCTTAACTTTAGTTACTGATTAATAAAAATTTTTAGTTTATGAATGT
Internal bar code:AGACACAGACTATGAATCTTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1700
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCATGCTTTGCCCCTTA
Suggested primer 2:ACGGTTGTTAGCATTCCACCA