Insertion junction: CLIP2.020757_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.020757
Chromosome:chromosome 3
Location:4665414
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177100 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTCAACAGCACGGTGCGGGAAGTGACGGGGCGTGAAATGACGGGGCGT
Internal bar code:GGTCTACCGGCCAGTGGTACGA

Confirmation - LEAP-Seq

LEAP-Seq distance:989
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GACTCATCAGCTACCGCTCC
Suggested primer 2:GTGATGGGTGTGGACTACCG