Insertion junction: CLIP2.020796_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.020796
Chromosome:chromosome 5
Location:2421823
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238650 PHC5 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Pherophorin-chlamydomonas homolog 5 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGGGTGCAGAGTCGTGGGGCCCCGTGGGTGACAACACGCTGAAAGTCT
Internal bar code:GTTTAGCCCTTTGCGGTAACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2257
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCCAGACATGTACACACC
Suggested primer 2:CGCTAAGATGGCAAACGAGC