Insertion junction: CLIP2.020811_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.020811
Chromosome:plastome
Location:79969
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802297 psbB,2717002,ChreCp032 (1 of 1) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB); photosystem II P680 chlorophyll A apoprotein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATTATCTGATGCATGGTCACGTATTCCAGAAAAATTAGCTTTCTATGA
Internal bar code:AATGCGGGCGGCAGGGTGTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:151
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTCACGGAAGATCGTACG
Suggested primer 2:GTTGGGCAGGTTCTATGGCT