Insertion junction: CLIP2.020855_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.020855
Chromosome:chromosome 5
Location:2563731
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g239500 FAP38 (1 of 1) IPR000104//IPR009068 - Antifreeze protein, type I // S15/NS1, RNA-binding; Flagellar Associated Protein 38 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCACCAACCTGCCTTACAACTGTCCCATCGCACACCAAACCAAGCTAA
Internal bar code:ATCCTTTCGATATCCGGGTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1133
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGAAGGTGCAACTCTGAC
Suggested primer 2:GCCCTTTCTTTCTCCCTCCC